Provenance Capture - Yes
- ActivePapers
- Burrito
- CARE
- CDE
- CRIS
- CVS
- DEEP: DEEP tracks the provenance of the dynamic contents of the document, although it is not attached to a workflow engine.
- Dropbox
- ES3
- eScienceCentral
- Galaxy
- GenePattern
- Git
- GoogleDrive
- IPython
- Kepler
- LLVM
- Mathematica
- MATLAB
- Mercurial
- noWorkflow
- OracleTotalRecall
- PASS
- ProvenanceCurious
- PTU
- RCloud
- RDataTracker
- ReproZip: ReproZip uses ptrace to capture provenance.
- Sage
- Sumatra
- SVN
- Taverna
- TemporalDB2
- Trident
- VisTrails
- Wings